the taller nozzle (~1.5mm to 2mm) will project into the slide cutaway.
IF it fits,
without jacking up the slide from allowing to close fully(careful) it will most likely have the same affect as a higher slide cutaway number - you might have a slide #6 (mm) installed but will behave like a 7.5 or 8. I think it will only affect the leaness off idle not where you are having the problem at 3000 (you must be on throttle by then).
...but being taller it may (*1) also move the point at which the fuelling is controlled from the diameter of the needle to the taper (might effectively lengthen the straight section of needle without affecting taper angle = SAME AS CLIP ADJUSTMENT if youre on CLIP 1 (TOP) and still need to go higher... points to your needle is at fault
(*1) It may be taller but are the insides lengthened as well?
From your first picture I cant agree that the internals are the same - left jet looks different from right one internally.

Clip 1 (TOP) = furthest from taper, lowers the needle into the jet, therefore makes it LEANER
Clip 5 (bottom) raises the needle out of the jet = more fuel, richer
youre at the end of adjustment - so the L1 or needle diameter or taper is incorrect (kind of linked together)
instead have you simply tried the KX needles instead of KR ones? four times less agrovation than pulling the carbs apart.
An airbox helps pull a CONSTANT moving stream of air into the motor (as well as tuned responses), without an airbox the carbs are grabbing at handfulls of still air or worse the carbs are fighting with an airstream working away from them.
NEEDLES ARE EASIEST TO CHANGE AND CAN BE DONE QUICKER
N427-68 (N68) NEEDLES COME IN 1.35 DEGREE ONLY (and single diameter) WITH 3 OPTIONS for L1 (only gives you about 1mm difference)
N427-46 series needles have lots of diameters, tapers and L1 options
THE SAME wrong NEEDLE
CAN PRODUCE (SOLELY ON CLIP POSITION ALONE) A CROSS OVER POINT FROM BEING SLIGHTLY RICH AT 0-1/4 TO GOING SLIGHTLY LEAN UP TO 1/2 OPEN, then RICHENING GRADUALLY AGAIN UNTIL W.O.T. -
compared with the ideal needle suited to your motor