Busy end to the year meant little bike time, and even less forum time since completing the build on my C3

Engine was built with a fresh crank, and felt and sounded 'normal' during a brief gentle road test. Shortly after that, the stator failed, and in my impatience to locate my flywheel holder, I put it into gear, and stood on the brake to attempt to loosen the flywheel bolt


Anyway, that didn't work, so removed the flywheel properly, and replaced the stator with an earlier version.
Bike starts and runs, but refuses to pull, and there is a whine that wasn't there before. Timing is correct, and there is no misfire at all. The engine just feels tight.
I suspect in my hurry to remove the flywheel bolt, I may have twisted the crank, therefore tightening up the centre bearings ???
Any thoughts ?
Thanks,
Tommy